pyiron.base.database.filetable module

class pyiron.base.database.filetable.FileTable(*args, **kwargs)

Bases: object

add_item_dict(par_dict)

delete_item(item_id)

force_reset()

get_child_ids(job_specifier, project=None, status=None)

Get the childs for a specific job

Parameters

• database (DatabaseAccess) – Database object

• sql_query (str) – SQL query to enter a more specific request

• user (str) – username of the user whoes user space should be searched

• project_path (str) – root_path - this is in contrast to the project_path in GenericPath

• job_specifier (str) – name of the master job or the master jobs job ID

• status (str) – filter childs which match a specific status - None by default

Returns

list of child IDs

Return type

list

get_db_columns()

static get_extract(path, mtime)

get_item_by_id(item_id)

get_items_dict(item_dict, return_all_columns=True)

get_job_id(job_specifier, project=None)

get_job_ids(project=None, recursive=True)

get_job_status(job_specifier, project=None)

Get the status of a particular job

Parameters

• database (DatabaseAccess) – Database object

• sql_query (str) – SQL query to enter a more specific request

• user (str) – username of the user whoes user space should be searched

• project_path (str) – root_path - this is in contrast to the project_path in GenericPath

• job_specifier (str) – name of the job or job ID

Returns

job status can be one of the following [‘initialized’, ‘appended’, ‘created’, ‘submitted’, ‘running’,

’aborted’, ‘collect’, ‘suspended’, ‘refresh’, ‘busy’, ‘finished’]

Return type

str

get_job_working_directory(job_specifier, project=None)

Get the working directory of a particular job

Parameters

• database (DatabaseAccess) – Database object

• sql_query (str) – SQL query to enter a more specific request

• user (str) – username of the user whoes user space should be searched

• project_path (str) – root_path - this is in contrast to the project_path in GenericPath

• job_specifier (str) – name of the job or job ID

Returns

working directory as absolute path

Return type

str

get_jobs(project=None, recursive=True, columns=None)

get_table_headings()

init_table(fileindex, working_dir_lst=None)

item_update(par_dict, item_id)

job_table(project=None, recursive=True, columns=None, all_columns=False, sort_by='id', max_colwidth=200, job_name_contains='')

set_job_status(job_specifier, status, project=None)

Set the status of a particular job

Parameters

• database (DatabaseAccess) – Database object

• sql_query (str) – SQL query to enter a more specific request

• user (str) – username of the user whoes user space should be searched

• project_path (str) – root_path - this is in contrast to the project_path in GenericPath

• job_specifier (str) – name of the job or job ID

• status (str) – job status can be one of the following [‘initialized’, ‘appended’, ‘created’, ‘submitted’, ‘running’, ‘aborted’, ‘collect’, ‘suspended’, ‘refresh’, ‘busy’, ‘finished’]

update()

class pyiron.base.database.filetable.Singleton

Bases: type

Implemented with suggestions from

http://stackoverflow.com/questions/6760685/creating-a-singleton-in-python

pyiron.base.database.filetable.filter_function(file_name)

pyiron.base.database.filetable.get_hamilton_from_file(hdf5_file, job_name)

pyiron.base.database.filetable.get_hamilton_version_from_file(hdf5_file, job_name)

pyiron.base.database.filetable.get_job_status_from_file(hdf5_file, job_name)